IL_8VFT_226

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_226 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.1667

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8VFT|1|9|G|1270
8VFT|1|9|C|1271
8VFT|1|9|C|1272
*
8VFT|1|9|G|1510
8VFT|1|9|U|1511
8VFT|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

eS10

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31