IL_8VK7_042

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VK7|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_042 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.2106

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8VK7|1|A|G|1149
8VK7|1|A|A|1150
8VK7|1|A|U|1151
8VK7|1|A|G|1152
*
8VK7|1|A|C|1239
8VK7|1|A|G|1240
8VK7|1|A|C|1241

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

Large ribosomal subunit protein uL16

Chain f

50S ribosomal protein L36