IL_8VK7_099

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

8VK7|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_099 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1489

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VK7|1|A|U|2860
8VK7|1|A|U|2861
8VK7|1|A|G|2862
8VK7|1|A|A|2863
8VK7|1|A|G|2864
*
8VK7|1|A|C|2998
8VK7|1|A|A|2999
8VK7|1|A|A|3000
8VK7|1|A|G|3001
8VK7|1|A|A|3002
8VK7|1|A|C|3003
8VK7|1|A|C|3004
8VK7|1|A|A|3005
8VK7|1|A|G|3006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S Ribosomal Protein L13