IL_8VKV_053
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 8VKV|1|D|A|1257, 8VKV|1|D|A|1280, 8VKV|1|D|C|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKV_053 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.1307
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VKV|1|D|G|1255
8VKV|1|D|A|1256
8VKV|1|D|A|1257
8VKV|1|D|G|1258
*
8VKV|1|D|C|1277
8VKV|1|D|G|1278
8VKV|1|D|G|1279
8VKV|1|D|A|1280
8VKV|1|D|C|1281
8VKV|1|D|C|1282
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain AB
- Transcription antitermination protein RfaH
- Chain I
- 30S ribosomal protein S3
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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