IL_8VKV_159

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8VKV|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_159 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.0767

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VKV|1|a|C|2636
8VKV|1|a|U|2637
8VKV|1|a|G|2638
8VKV|1|a|A|2639
8VKV|1|a|G|2640
*
8VKV|1|a|C|2774
8VKV|1|a|G|2775
8VKV|1|a|A|2776
8VKV|1|a|G|2777
8VKV|1|a|A|2778
8VKV|1|a|U|2779
8VKV|1|a|G|2780
8VKV|1|a|A|2781
8VKV|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13