IL_8VOP_032

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8VOP|1|D|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_032 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.091

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VOP|1|D|U|684
8VOP|1|D|G|685
8VOP|1|D|U|686
8VOP|1|D|A|687
8VOP|1|D|G|688
*
8VOP|1|D|C|699
8VOP|1|D|G|700
8VOP|1|D|U|701
8VOP|1|D|A|702
8VOP|1|D|G|703
8VOP|1|D|A|704
8VOP|1|D|G|705
8VOP|1|D|A|706

Current chains

Chain D

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S11

Chain a

Large subunit ribosomal RNA; LSU rRNA