IL_8VS9_044

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8VS9|1|16S|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_044 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1916

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VS9|1|16S|U|684
8VS9|1|16S|G|685
8VS9|1|16S|U|686
8VS9|1|16S|A|687
8VS9|1|16S|G|688
*
8VS9|1|16S|C|699
8VS9|1|16S|G|700
8VS9|1|16S|U|701
8VS9|1|16S|A|702
8VS9|1|16S|G|703
8VS9|1|16S|A|704
8VS9|1|16S|G|705
8VS9|1|16S|A|706

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain S11

30S ribosomal protein S11