IL_8VS9_066

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8VS9|1|16S|A|1257, 8VS9|1|16S|A|1280, 8VS9|1|16S|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_066 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2973

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8VS9|1|16S|G|1255
8VS9|1|16S|A|1256
8VS9|1|16S|A|1257
8VS9|1|16S|G|1258
*
8VS9|1|16S|C|1277
8VS9|1|16S|G|1278
8VS9|1|16S|G|1279
8VS9|1|16S|A|1280
8VS9|1|16S|C|1281
8VS9|1|16S|C|1282

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S03

30S ribosomal protein S3

Chain S10

30S ribosomal protein S10

Chain S14

Small ribosomal subunit protein uS14