IL_8VS9_075
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_075 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.1598
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VS9|1|16S|A|1430
8VS9|1|16S|A|1431
8VS9|1|16S|G|1432
8VS9|1|16S|A|1433
8VS9|1|16S|A|1434
8VS9|1|16S|G|1435
*
8VS9|1|16S|C|1466
8VS9|1|16S|C|1467
8VS9|1|16S|A|1468
8VS9|1|16S|C|1469
8VS9|1|16S|U|1470
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L14
- 50S ribosomal protein L14
- Chain L19
- 50S ribosomal protein L19
- Chain S20
- 30S ribosomal protein S20
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