IL_8VS9_078
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_078 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.2009
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VS9|1|23S|G|24
8VS9|1|23S|U|25
8VS9|1|23S|G|26
8VS9|1|23S|G|27
8VS9|1|23S|A|28
8VS9|1|23S|U|29
8VS9|1|23S|G|30
*
8VS9|1|23S|C|510
8VS9|1|23S|U|511
8VS9|1|23S|G|512
8VS9|1|23S|A|513
8VS9|1|23S|A|514
8VS9|1|23S|A|515
8VS9|1|23S|C|516
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L20
- 50S ribosomal protein L20
- Chain L22
- 50S ribosomal protein L22
- Chain L32
- 50S ribosomal protein L32
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