IL_8VS9_114

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8VS9|1|23S|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_114 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1525

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8VS9|1|23S|U|1018
8VS9|1|23S|U|1019
8VS9|1|23S|A|1020
8VS9|1|23S|A|1021
8VS9|1|23S|G|1022
8VS9|1|23S|U|1023
8VS9|1|23S|G|1024
*
8VS9|1|23S|C|1140
8VS9|1|23S|U|1141
8VS9|1|23S|A|1142
8VS9|1|23S|A|1143
8VS9|1|23S|A|1144

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L13

50S ribosomal protein L13

Chain L36

50S ribosomal protein L36