IL_8VS9_149

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8VS9|1|23S|A|1801, 8VS9|1|23S|C|1816, 8VS9|1|23S|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_149 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1097

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VS9|1|23S|U|1798
8VS9|1|23S|G|1799
8VS9|1|23S|C|1800
8VS9|1|23S|A|1801
8VS9|1|23S|A|1802
8VS9|1|23S|A|1803
8VS9|1|23S|C|1804
*
8VS9|1|23S|G|1813
8VS9|1|23S|G|1814
8VS9|1|23S|A|1815
8VS9|1|23S|C|1816
8VS9|1|23S|G|1817
8VS9|1|23S|U|1818
8VS9|1|23S|A|1819
8VS9|1|23S|U|1820
8VS9|1|23S|A|1821

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2