IL_8VS9_186
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8VS9|1|23S|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_186 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1385
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8VS9|1|23S|C|2636
8VS9|1|23S|U|2637
8VS9|1|23S|G|2638
8VS9|1|23S|A|2639
8VS9|1|23S|G|2640
*
8VS9|1|23S|C|2774
8VS9|1|23S|G|2775
8VS9|1|23S|A|2776
8VS9|1|23S|G|2777
8VS9|1|23S|A|2778
8VS9|1|23S|U|2779
8VS9|1|23S|G|2780
8VS9|1|23S|A|2781
8VS9|1|23S|G|2782
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L13
- 50S ribosomal protein L13
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