3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
8VS9|1|23S|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_186 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.1385
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8VS9|1|23S|C|2636
8VS9|1|23S|U|2637
8VS9|1|23S|G|2638
8VS9|1|23S|A|2639
8VS9|1|23S|G|2640
*
8VS9|1|23S|C|2774
8VS9|1|23S|G|2775
8VS9|1|23S|A|2776
8VS9|1|23S|G|2777
8VS9|1|23S|A|2778
8VS9|1|23S|U|2779
8VS9|1|23S|G|2780
8VS9|1|23S|A|2781
8VS9|1|23S|G|2782

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L03
50S ribosomal protein L3
Chain L13
50S ribosomal protein L13

Coloring options:


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