IL_8VS9_188
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCACU*AAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_188 not in the Motif Atlas
- Homologous match to IL_5J7L_347
- Geometric discrepancy: 0.137
- The information below is about IL_5J7L_347
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
8VS9|1|23S|U|2680
8VS9|1|23S|C|2681
8VS9|1|23S|A|2682
8VS9|1|23S|C|2683
8VS9|1|23S|U|2684
*
8VS9|1|23S|A|2725
8VS9|1|23S|A|2726
8VS9|1|23S|A|2727
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L14
- 50S ribosomal protein L14
- Chain L17
- Large ribosomal subunit protein bL17
- Chain L19
- 50S ribosomal protein L19
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