IL_8VS9_189
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8VS9|1|23S|U|2689, 8VS9|1|23S|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_189 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.1523
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8VS9|1|23S|U|2687
8VS9|1|23S|G|2688
8VS9|1|23S|U|2689
8VS9|1|23S|U|2690
8VS9|1|23S|C|2691
*
8VS9|1|23S|G|2718
8VS9|1|23S|G|2719
8VS9|1|23S|U|2720
8VS9|1|23S|A|2721
8VS9|1|23S|G|2722
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L17
- Large ribosomal subunit protein bL17
- Chain L19
- 50S ribosomal protein L19
Coloring options: