3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGUUC*GGUAG
Length
10 nucleotides
Bulged bases
8VS9|1|23S|U|2689, 8VS9|1|23S|U|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_189 not in the Motif Atlas
Homologous match to IL_5J7L_348
Geometric discrepancy: 0.1523
The information below is about IL_5J7L_348
Detailed Annotation
UAA/GAN related, with intercalation
Broad Annotation
UAA/GAN related, with intercalation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

8VS9|1|23S|U|2687
8VS9|1|23S|G|2688
8VS9|1|23S|U|2689
8VS9|1|23S|U|2690
8VS9|1|23S|C|2691
*
8VS9|1|23S|G|2718
8VS9|1|23S|G|2719
8VS9|1|23S|U|2720
8VS9|1|23S|A|2721
8VS9|1|23S|G|2722

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L03
50S ribosomal protein L3
Chain L17
Large ribosomal subunit protein bL17
Chain L19
50S ribosomal protein L19

Coloring options:


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