IL_8VVQ_023
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- 8VVQ|1|WA|A|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_023 not in the Motif Atlas
- Geometric match to IL_8P9A_421
- Geometric discrepancy: 0.3625
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8VVQ|1|WA|G|443
8VVQ|1|WA|G|444
8VVQ|1|WA|U|445
8VVQ|1|WA|C|446
*
8VVQ|1|WA|G|1302
8VVQ|1|WA|C|1303
8VVQ|1|WA|U|1304
8VVQ|1|WA|A|1305
8VVQ|1|WA|C|1306
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain DA
- L32
- Chain EA
- eL33
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: