IL_8VVQ_050

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_050 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.377

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8VVQ|1|WA|G|1427
8VVQ|1|WA|G|1428
8VVQ|1|WA|A|1429
8VVQ|1|WA|U|1430
8VVQ|1|WA|C|1431
*
8VVQ|1|WA|G|1457
8VVQ|1|WA|C|1458
8VVQ|1|WA|G|1459
8VVQ|1|WA|C|1460
8VVQ|1|WA|A|1461
8VVQ|1|WA|C|1462

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain P

eL18