IL_8VVQ_055
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VVQ|1|WA|A|1652, 8VVQ|1|WA|G|1656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_055 not in the Motif Atlas
- Geometric match to IL_8CRE_030
- Geometric discrepancy: 0.1212
- The information below is about IL_8CRE_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VVQ|1|WA|G|1524
8VVQ|1|WA|A|1525
8VVQ|1|WA|A|1526
8VVQ|1|WA|A|1527
8VVQ|1|WA|G|1528
*
8VVQ|1|WA|C|1650
8VVQ|1|WA|U|1651
8VVQ|1|WA|A|1652
8VVQ|1|WA|G|1653
8VVQ|1|WA|U|1654
8VVQ|1|WA|A|1655
8VVQ|1|WA|G|1656
8VVQ|1|WA|C|1657
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain IA
- L37
- Chain K
- eL13
- Chain M
- L15
- Chain Z
- L27A
Coloring options: