IL_8VVQ_082

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8VVQ|1|WA|G|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_082 not in the Motif Atlas

Geometric match to IL_8P9A_283

Geometric discrepancy: 0.3425

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVQ|1|WA|G|1975
8VVQ|1|WA|U|1976
8VVQ|1|WA|G|1977
8VVQ|1|WA|G|1978
8VVQ|1|WA|C|1979
*
8VVQ|1|WA|G|1991
8VVQ|1|WA|A|1992
8VVQ|1|WA|A|1993
8VVQ|1|WA|U|1994
8VVQ|1|WA|C|1995

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain RA

L12

Chain b

RPLP0