IL_8VVQ_204

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8VVQ|1|ZA|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_204 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.2056

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVQ|1|ZA|G|535
8VVQ|1|ZA|A|536
8VVQ|1|ZA|C|537
*
8VVQ|1|ZA|G|546
8VVQ|1|ZA|G|547
8VVQ|1|ZA|C|548
8VVQ|1|ZA|C|549

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30