IL_8VVT_005
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1681
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVT|1|WA|C|30
8VVT|1|WA|U|31
8VVT|1|WA|G|32
8VVT|1|WA|A|33
8VVT|1|WA|A|34
8VVT|1|WA|U|35
8VVT|1|WA|U|36
8VVT|1|WA|U|37
*
8VVT|1|WA|A|44
8VVT|1|WA|U|45
8VVT|1|WA|U|46
8VVT|1|WA|A|47
8VVT|1|WA|G|48
8VVT|1|WA|U|49
8VVT|1|WA|C|50
8VVT|1|WA|A|51
8VVT|1|WA|G|52
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain IA
- L37
- Chain K
- eL13
- Chain M
- L15
- Chain NA
- eL42
- Chain Z
- uL15
Coloring options: