IL_8VVT_062

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_062 not in the Motif Atlas

Geometric match to IL_8CRE_044

Geometric discrepancy: 0.1426

The information below is about IL_8CRE_044

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8VVT|1|WA|A|1751
8VVT|1|WA|U|1752
8VVT|1|WA|U|1753
8VVT|1|WA|A|1754
*
8VVT|1|WA|U|1786
8VVT|1|WA|U|1787
8VVT|1|WA|C|1788
8VVT|1|WA|U|1789

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

L5

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA