IL_8VVT_077

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8VVT|1|WA|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_077 not in the Motif Atlas

Geometric match to IL_8P9A_283

Geometric discrepancy: 0.2871

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVT|1|WA|G|1978
8VVT|1|WA|U|1979
8VVT|1|WA|G|1980
8VVT|1|WA|G|1981
8VVT|1|WA|C|1982
*
8VVT|1|WA|G|1994
8VVT|1|WA|A|1995
8VVT|1|WA|A|1996
8VVT|1|WA|U|1997
8VVT|1|WA|C|1998

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain QA

uL10

Chain RA

uL3