IL_8VVT_082
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VVT|1|WA|U|2310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_082 not in the Motif Atlas
- Geometric match to IL_4V9F_048
- Geometric discrepancy: 0.1547
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8VVT|1|WA|C|2307
8VVT|1|WA|C|2308
8VVT|1|WA|U|2309
8VVT|1|WA|U|2310
8VVT|1|WA|G|2311
8VVT|1|WA|A|2312
8VVT|1|WA|A|2313
8VVT|1|WA|G|2314
*
8VVT|1|WA|U|2334
8VVT|1|WA|G|2335
8VVT|1|WA|G|2336
8VVT|1|WA|A|2337
8VVT|1|WA|G|2338
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- eL32
- Chain X
- L26
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: