IL_8VVT_097

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_097 not in the Motif Atlas

Geometric match to IL_8P9A_302

Geometric discrepancy: 0.1091

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8VVT|1|WA|A|2837
8VVT|1|WA|A|2838
8VVT|1|WA|C|2839
8VVT|1|WA|A|2840
8VVT|1|WA|A|2841
8VVT|1|WA|U|2842
8VVT|1|WA|G|2843
*
8VVT|1|WA|C|3855
8VVT|1|WA|U|3856
8VVT|1|WA|A|3857
8VVT|1|WA|U|3858

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

eL31

Chain O

uL22