IL_8VVT_123
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- U(B8H)GA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_123 not in the Motif Atlas
- Geometric match to IL_8CRE_440
- Geometric discrepancy: 0.1857
- The information below is about IL_8CRE_440
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8VVT|1|WA|U|4300
8VVT|1|WA|B8H|4301
8VVT|1|WA|G|4302
8VVT|1|WA|A|4303
*
8VVT|1|WA|U|4317
8VVT|1|WA|A|4318
8VVT|1|WA|C|4319
8VVT|1|WA|A|4320
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain AA
- eL29
- Chain D
- L5
- Chain NA
- eL42
- Chain P
- eL18
- Chain S
- eL21
Coloring options: