IL_8VVT_194
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_194 not in the Motif Atlas
- Geometric match to IL_8CRE_421
- Geometric discrepancy: 0.1135
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8VVT|1|ZA|A|599
8VVT|1|ZA|G|600
8VVT|1|ZA|G|601
8VVT|1|ZA|G|602
8VVT|1|ZA|C|603
8VVT|1|ZA|A|604
8VVT|1|ZA|A|605
8VVT|1|ZA|G|606
*
8VVT|1|ZA|C|636
8VVT|1|ZA|U|637
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain CB
- eS1
- Chain EC
- S30
- Chain JB
- S9
- Chain w
- Serpine mRNA binding protein 1
Coloring options: