IL_8VVT_213

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8VVT|1|ZA|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_213 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.2706

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VVT|1|ZA|G|952
8VVT|1|ZA|C|953
8VVT|1|ZA|U|954
8VVT|1|ZA|A|955
8VVT|1|ZA|G|956
*
8VVT|1|ZA|C|967
8VVT|1|ZA|U|968
8VVT|1|ZA|U|969
8VVT|1|ZA|G|970
8VVT|1|ZA|G|971
8VVT|1|ZA|A|972
8VVT|1|ZA|C|973
8VVT|1|ZA|C|974

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain OB

uS11

Chain WA

Large subunit ribosomal RNA; LSU rRNA