IL_8VVT_215
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_215 not in the Motif Atlas
- Geometric match to IL_8CRE_438
- Geometric discrepancy: 0.0947
- The information below is about IL_8CRE_438
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8VVT|1|ZA|C|1047
8VVT|1|ZA|G|1048
8VVT|1|ZA|A|1049
8VVT|1|ZA|A|1050
8VVT|1|ZA|G|1051
*
8VVT|1|ZA|C|1067
8VVT|1|ZA|G|1068
8VVT|1|ZA|U|1069
8VVT|1|ZA|A|1070
8VVT|1|ZA|G|1071
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain A
- L8
- Chain AC
- eS26
- Chain OB
- uS11
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: