IL_8VVU_011

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

8VVU|1|WA|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_011 not in the Motif Atlas

Geometric match to IL_8P9A_236

Geometric discrepancy: 0.1759

The information below is about IL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVU|1|WA|A|121
8VVU|1|WA|U|122
*
8VVU|1|WA|A|147
8VVU|1|WA|A|148
8VVU|1|WA|A|149
8VVU|1|WA|U|150
8VVU|1|WA|G|151
8VVU|1|WA|U|152

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain M

L15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA