IL_8VVU_059

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_059 not in the Motif Atlas

Geometric match to IL_8CRE_072

Geometric discrepancy: 0.1712

The information below is about IL_8CRE_072

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8VVU|1|WA|C|1553
8VVU|1|WA|G|1554
8VVU|1|WA|A|1555
8VVU|1|WA|A|1556
8VVU|1|WA|G|1557
*
8VVU|1|WA|U|1574
8VVU|1|WA|G|1575
8VVU|1|WA|G|1576
8VVU|1|WA|A|1577
8VVU|1|WA|G|1578

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain OA

eL43

Chain Q

eL19