IL_8VVU_157

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_157 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.2685

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVU|1|WA|G|4745
8VVU|1|WA|A|4746
8VVU|1|WA|G|4747
8VVU|1|WA|C|4748
*
8VVU|1|WA|G|4956
8VVU|1|WA|A|4957
8VVU|1|WA|A|4958
8VVU|1|WA|C|4959

Current chains

Chain WA

28S rRNA

Nearby chains

Chain YA

5.8S ribosomal RNA; 5.8S rRNA