IL_8VVU_212

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_212 not in the Motif Atlas

Geometric match to IL_413D_001

Geometric discrepancy: 0.2385

The information below is about IL_413D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8VVU|1|ZA|G|692
8VVU|1|ZA|A|693
8VVU|1|ZA|G|694
8VVU|1|ZA|C|695
*
8VVU|1|ZA|G|731
8VVU|1|ZA|U|732
8VVU|1|ZA|C|733
8VVU|1|ZA|C|734

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HB

eS7

Chain WB

S15A