IL_8VVU_222

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_222 not in the Motif Atlas

Geometric match to IL_8P9A_421

Geometric discrepancy: 0.1291

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVU|1|ZA|G|942
8VVU|1|ZA|U|943
8VVU|1|ZA|A|944
8VVU|1|ZA|U|945
*
8VVU|1|ZA|A|981
8VVU|1|ZA|G|982
8VVU|1|ZA|A|983
8VVU|1|ZA|C|984

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain A

uL2

Chain BB

S3A

Chain OB

S14