IL_8VVU_224
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_224 not in the Motif Atlas
- Geometric match to IL_8CRE_437
- Geometric discrepancy: 0.1895
- The information below is about IL_8CRE_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31359.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8VVU|1|ZA|A|1042
8VVU|1|ZA|G|1043
8VVU|1|ZA|G|1044
8VVU|1|ZA|U|1045
8VVU|1|ZA|U|1046
8VVU|1|ZA|C|1047
*
8VVU|1|ZA|G|1071
8VVU|1|ZA|U|1072
8VVU|1|ZA|U|1073
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain A
- uL2
- Chain AC
- S26
- Chain OB
- S14
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
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