IL_8VVV_052
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VVV|1|5|A|1656, 8VVV|1|5|G|1660
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_052 not in the Motif Atlas
- Geometric match to IL_8CRE_030
- Geometric discrepancy: 0.1029
- The information below is about IL_8CRE_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VVV|1|5|OMG|1528
8VVV|1|5|A|1529
8VVV|1|5|A2M|1530
8VVV|1|5|A|1531
8VVV|1|5|G|1532
*
8VVV|1|5|C|1654
8VVV|1|5|U|1655
8VVV|1|5|A|1656
8VVV|1|5|G|1657
8VVV|1|5|U|1658
8VVV|1|5|A|1659
8VVV|1|5|G|1660
8VVV|1|5|C|1661
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain j
- eL37
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