IL_8VVV_064
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8VVV|1|5|G|1747, 8VVV|1|5|A|1748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_064 not in the Motif Atlas
- Geometric match to IL_8P9A_268
- Geometric discrepancy: 0.1254
- The information below is about IL_8P9A_268
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8VVV|1|5|G|1745
8VVV|1|5|C|1746
8VVV|1|5|G|1747
8VVV|1|5|A|1748
8VVV|1|5|A|1749
8VVV|1|5|U|1750
*
8VVV|1|5|A|1792
8VVV|1|5|A|1793
8VVV|1|5|A|1794
8VVV|1|5|C|1795
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain I
- L10
- Chain T
- eL21
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