IL_8VVV_068

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_068 not in the Motif Atlas

Geometric match to IL_8AF0_004

Geometric discrepancy: 0.2395

The information below is about IL_8AF0_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVV|1|5|G|1767
8VVV|1|5|C|1768
8VVV|1|5|C|1769
*
8VVV|1|5|G|1775
8VVV|1|5|A|1776
8VVV|1|5|U|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

uL5