IL_8VVV_145
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUA(PSU)(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8VVV|1|5|U|4640, 8VVV|1|5|PSU|4642
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_145 not in the Motif Atlas
- Geometric match to IL_8P9A_346
- Geometric discrepancy: 0.2783
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VVV|1|5|U|4638
8VVV|1|5|G|4639
8VVV|1|5|U|4640
8VVV|1|5|A|4641
8VVV|1|5|PSU|4642
8VVV|1|5|OMG|4643
*
8VVV|1|5|C|4668
8VVV|1|5|G|4669
8VVV|1|5|A|4670
8VVV|1|5|A|4671
8VVV|1|5|G|4672
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain W
- uL24
- Chain d
- eL31
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