IL_8VVV_158

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8VVV|1|5|G|5055

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_158 not in the Motif Atlas

Geometric match to IL_8P9A_359

Geometric discrepancy: 0.1863

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VVV|1|5|G|5006
8VVV|1|5|U|5007
8VVV|1|5|U|5008
*
8VVV|1|5|G|5051
8VVV|1|5|U|5052
8VVV|1|5|C|5053
8VVV|1|5|A|5054
8VVV|1|5|G|5055
8VVV|1|5|C|5056

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

uL24

Chain d

eL31