IL_8VVV_196

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8VVV|1|9|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_196 not in the Motif Atlas

Geometric match to IL_8P9A_418

Geometric discrepancy: 0.3844

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVV|1|9|G|535
8VVV|1|9|A|536
8VVV|1|9|C|537
*
8VVV|1|9|G|546
8VVV|1|9|G|547
8VVV|1|9|C|548
8VVV|1|9|C|549

Current chains

Chain 9

18S rRNA

Nearby chains

Chain ee

eS30