IL_8VVV_205
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_205 not in the Motif Atlas
- Geometric match to IL_8CRE_426
- Geometric discrepancy: 0.1239
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8VVV|1|9|C|676
8VVV|1|9|G|677
8VVV|1|9|U|678
8VVV|1|9|A|679
8VVV|1|9|G|680
*
8VVV|1|9|U|1025
8VVV|1|9|C|1026
8VVV|1|9|A|1027
8VVV|1|9|A|1028
8VVV|1|9|G|1029
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain WW
- uS8
- Chain XX
- uS12
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