IL_8VVV_238
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8VVV|1|9|C|1331, 8VVV|1|9|U|1494, 8VVV|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_238 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1498
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|9|U|1329
8VVV|1|9|G|1330
8VVV|1|9|C|1331
8VVV|1|9|A|1332
8VVV|1|9|U|1333
8VVV|1|9|G|1334
8VVV|1|9|G|1335
*
8VVV|1|9|U|1492
8VVV|1|9|C|1493
8VVV|1|9|U|1494
8VVV|1|9|G|1495
8VVV|1|9|U|1496
8VVV|1|9|G|1497
8VVV|1|9|A|1498
8VVV|1|9|U|1499
8VVV|1|9|G|1500
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain UU
- uS10
- Chain dd
- uS14
- Chain v
- eukaryotic elongation factor 2
- Chain w
- Serpine mRNA binding protein 1
Coloring options: