IL_8Y5O_021

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8Y5O|1|1|U|846, 8Y5O|1|1|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_021 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.2923

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8Y5O|1|1|A|844
8Y5O|1|1|A|845
8Y5O|1|1|U|846
8Y5O|1|1|U|847
8Y5O|1|1|C|848
*
8Y5O|1|1|G|930
8Y5O|1|1|U|931
8Y5O|1|1|U|932
8Y5O|1|1|A|933
8Y5O|1|1|U|934

Current chains

Chain 1

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L30