IL_8Y5O_049

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8Y5O|1|1|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_049 not in the Motif Atlas

Geometric match to IL_7A0S_033

Geometric discrepancy: 0.1529

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8Y5O|1|1|C|1417
8Y5O|1|1|G|1418
8Y5O|1|1|A|1419
8Y5O|1|1|A|1420
8Y5O|1|1|G|1421
*
8Y5O|1|1|C|1577
8Y5O|1|1|U|1578
8Y5O|1|1|A|1579
8Y5O|1|1|A|1580
8Y5O|1|1|G|1581

Current chains

Chain 1

23S rRNA

Nearby chains