IL_8Y5P_036

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8Y5P|1|1|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_036 not in the Motif Atlas

Geometric match to IL_2QEK_001

Geometric discrepancy: 0.2505

The information below is about IL_2QEK_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8Y5P|1|1|G|1031
8Y5P|1|1|A|1032
8Y5P|1|1|U|1033
8Y5P|1|1|G|1034
*
8Y5P|1|1|C|1121
8Y5P|1|1|G|1122
8Y5P|1|1|C|1123

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16