IL_8Y5P_066

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8Y5P|1|1|A|1801, 8Y5P|1|1|C|1816, 8Y5P|1|1|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_066 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1403

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Y5P|1|1|U|1798
8Y5P|1|1|G|1799
8Y5P|1|1|C|1800
8Y5P|1|1|A|1801
8Y5P|1|1|A|1802
8Y5P|1|1|A|1803
8Y5P|1|1|C|1804
*
8Y5P|1|1|G|1813
8Y5P|1|1|G|1814
8Y5P|1|1|A|1815
8Y5P|1|1|C|1816
8Y5P|1|1|G|1817
8Y5P|1|1|U|1818
8Y5P|1|1|A|1819
8Y5P|1|1|U|1820
8Y5P|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2