IL_8Y5P_121
3D structure
- PDB id
- 8Y5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8Y5P|1|3|U|244, 8Y5P|1|3|A|279, 8Y5P|1|3|C|280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5P_121 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.301
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Y5P|1|3|G|242
8Y5P|1|3|A|243
8Y5P|1|3|U|244
8Y5P|1|3|U|245
8Y5P|1|3|A|246
8Y5P|1|3|G|247
*
8Y5P|1|3|C|277
8Y5P|1|3|G|278
8Y5P|1|3|A|279
8Y5P|1|3|C|280
8Y5P|1|3|G|281
8Y5P|1|3|A|282
8Y5P|1|3|U|283
8Y5P|1|3|C|284
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
Coloring options: