IL_8Y5R_065

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8Y5R|1|1|A|1801, 8Y5R|1|1|C|1816, 8Y5R|1|1|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_065 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1073

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Y5R|1|1|U|1798
8Y5R|1|1|G|1799
8Y5R|1|1|C|1800
8Y5R|1|1|A|1801
8Y5R|1|1|A|1802
8Y5R|1|1|A|1803
8Y5R|1|1|C|1804
*
8Y5R|1|1|G|1813
8Y5R|1|1|G|1814
8Y5R|1|1|A|1815
8Y5R|1|1|C|1816
8Y5R|1|1|G|1817
8Y5R|1|1|U|1818
8Y5R|1|1|A|1819
8Y5R|1|1|U|1820
8Y5R|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2