IL_8Y5R_164

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_164 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1347

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8Y5R|1|3|C|1303
8Y5R|1|3|G|1304
8Y5R|1|3|G|1305
8Y5R|1|3|A|1306
8Y5R|1|3|U|1307
8Y5R|1|3|U|1308
*
8Y5R|1|3|A|1329
8Y5R|1|3|U|1330
8Y5R|1|3|G|1331
8Y5R|1|3|A|1332
8Y5R|1|3|A|1333
8Y5R|1|3|G|1334

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19